Jens Roat Kultima Ph.D. student @ (Bork Group & EMBL)

Selected publications:

S. Schloissnig, M. Arumugam, S. Sunagawa, M. Mitreva, J. Tap, A. Zhu, A. Waller, D. Mende, J. Roat Kultima, J. Martin, K. Kota, S. Sunyaev, G. Weinstock, P. Bork (2012) Genomic variation landscape of the human gut microbiome Nature (IF 36.280)

J. Roat Kultima, S. Sunagawa, J. Li, W. Chen, H. Chen, D. Mende, M. Arumugam, Q. Pan, B. Liu, J. Qin, J. Wang, P. Bork (2012) MOCAT: a metagenomics assembly and gene prediction toolkit PLoS ONE (IF 4.092)

All my publications in reverse chronological order:

13) J. Li, … , J. Roat Kultima, … , P. Bork & J. Wang (2014) An integrated catalog of reference genes in the human gut microbiome Nat Biotech. (IF 32.438)

12) H.B. Nielsen, … , J. Roat Kultima, … , S. Brunak & S. D. Ehrlich (2014) Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes Nat Biotech. (IF 32.438)

11) A. Waller, T. Yamada, D. Kristensen, J. Roat Kultima, S. Sunagawa, E. Koonin, P. Bork (2014) Classification and quantification of bacteriophage taxa in human gut metagenomes ISME J. (IF 8.951)

10) S. Sunagawa, D. Mende, G. Zeller, F. Izquierdo-Carrasco, S. Berger, J. Roat Kultima, P. Coelho, M. Arumugam, J. Tap, B. Nielsen, S. Rasmussen, S. Brunak, O. Pedersen, F. Guarner, M. de Vos, J. Wang, J. Li, J. Doré, S. Ehrlich, A. Stamatakis, P. Bork (2013) Metagenomic species profiling using universal phylogenetic marker genes Nat Methods (IF 23.565)

9) K. Forslund, S. Sunagawa, J. Roat Kultima, D. Mende, M. Arumugam, A. Typas, P. Bork (2013) Country-specific antibiotic use practices impact the human gut resistome Genome Res (IF 14.397)

8) S. Schloissnig, M. Arumugam, S. Sunagawa, M. Mitreva, J. Tap, A. Zhu, A. Waller, D. Mende, J. Roat Kultima, J. Martin, K. Kota, S. Sunyaev, G. Weinstock, P. Bork (2012) Genomic variation landscape of the human gut microbiome Nature (IF 36.280)

7) J. Roat Kultima, S. Sunagawa, J. Li, W. Chen, H. Chen, D. Mende, M. Arumugam, Q. Pan, B. Liu, J. Qin, J. Wang, P. Bork (2012) MOCAT: a metagenomics assembly and gene prediction toolkit PLoS ONE (IF 4.092)

6) C. Xu, D. Miranda-Nieves, J A. Ankrum, M. E. Matthiesen, J. A. Phillips, I. Roes, G. R. Wojtkiewicz, V. Juneja, J. Roat Kultima, W. Zhao, P. K. Vemula, C. P. Lin, M. Nahrendorf, J. M. Karp (2012) Tracking Mesenchymal Stem Cells with Iron Oxide Nanoparticle Loaded Poly(lactide-co-glycolide) Microparticles Nano Lett. (IF 13.198) [part of M.Sc. Thesis]

5) C. Östman, F. Borg, C. Roat, J. Roat Kultima, S. Y. G. Wong (2012) Cnidae in the sea anemone Sagartiogeton viduatus (Muller, 1776) (Cnidaria, Anthozoa); A comparison to cnidae in the sea anemone Metridium senile (Linnaeus, 1761) (Cnidaria, Anthozoa) Acta Zoologica (IF 1.133)

4) L. Guy, J. Roat Kultima, S. Andersson (2010) genoPlotR: comparative gene and genome visualization in R Bioinformatics Available at http://r-forge.r-project.org/projects/genoplotr/ (IF 4.926)

3) C. Östman, J. Roat Kultima, C. Roat, K. Rundblom (2010) Acontia and mesentery nematocysts of the sea anemone Metridium senile (Linnaeus, 1761) (Cnidaria: Anthozoa) Sci. Mar. (IF 1.406)

2) C. Östman, J. Roat Kultima, S. Y. G. Wong (2010) Dart formation in nematocysts of the sea anemone Metridium senile (Linnaeus, 1761) (Cnidaria: Anthozoa) Sci. Mar. (IF 1.406)

1) C. Östman, J. Roat Kultima, C. Roat (2010) Tentacle cnidae of the sea anemone Metridium senile (Linnaeus, 1761) (Cnidaria: Anthozoa) Sci. Mar. (IF 1.406)

0) Acknowledged in: P. Wahlberg et al. (2007) A high-resolution linkage map for the Z chromosome in chicken reveals hot spots for recombination Cytogenet Genom. Quote: "We would also like to thank Jens Roat Kultima for excellent bioinformatics assistance."(IF 1.96)